Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LIHC rs7171800 chr15:91754096 T/G 5.97E-9 359 20.8 14.33 5.38 KM Plot
LIHC rs72170984 chr2:37192250 CTCT/C 1.67E-5 361 20.45 12.68 8.73 KM Plot
LIHC rs7243891 chr18:56134329 A/G 1.41E-13 368 0.63 22.93 18.83 KM Plot
LIHC rs72751483 chr5:25327495 A/C 6.47E-5 363 18.7 23.17 2.17 KM Plot
LIHC rs72780216 chr5:126169748 G/A 3.42E-5 364 19.83 12.17 2.23 KM Plot
LIHC rs72780222 chr5:126172772 G/A 3.42E-5 364 19.83 12.17 2.23 KM Plot
LIHC rs72780278 chr5:126174945 T/C 8.98E-6 359 19.95 12.67 2.23 KM Plot
LIHC rs72989216 chr11:73491106 C/T 4.21E-6 360 19 20.95 1.87 KM Plot
LIHC rs72989263 chr11:73558292 T/C 3.31E-6 368 19.5 20.48 1.87 KM Plot
LIHC rs73141965 chr5:94773762 G/A 5.46E-6 361 19.3 20.52 2.18 KM Plot
LIHC rs73143927 chr5:94774202 G/A 5.46E-6 361 19.3 20.52 2.18 KM Plot
LIHC rs73268165 chr5:147024912 G/A 1.68E-5 365 19.87 18.45 4.25 KM Plot
LIHC rs73515583 chr15:91752284 T/C 1.75E-5 368 20.5 14.47 9.87 KM Plot
LIHC rs73515588 chr15:91753516 C/T 1.66E-5 367 20.5 14.33 9.87 KM Plot
LIHC rs73903675 chr20:30470430 T/A 8.31E-13 355 19.58 20.33 0.63 KM Plot